YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55229797, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	23	0.93
Transmembrane Helix	24	44	0.93
Non-Cytoplasmic	45	105	0.96
Transmembrane Helix	106	128	0.90
Cytoplasmic	129	140	0.85
Transmembrane Helix	141	161	0.94
Non-Cytoplasmic	162	170	0.80
Transmembrane Helix	171	195	0.80
Cytoplasmic	196	240	0.93
Transmembrane Helix	241	266	0.80
Non-Cytoplasmic	267	286	0.85
Transmembrane Helix	287	306	0.96
Cytoplasmic	307	341	0.94
Transmembrane Helix	342	364	0.90
Non-Cytoplasmic	365	401	0.94
Transmembrane Helix	402	423	0.95
Cytoplasmic	424	434	0.82
Transmembrane Helix	435	457	0.88
Non-Cytoplasmic	458	466	0.78
Transmembrane Helix	467	488	0.84
Cytoplasmic	489	521	0.80
Transmembrane Helix	522	541	0.84
Non-Cytoplasmic	542	543	0.48
Transmembrane Helix	544	563	0.57
Cytoplasmic	564	570	0.48
Transmembrane Helix	571	592	0.89
Non-Cytoplasmic	593	602	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTETASSPSS KRGRTVRNTI ERRAIVGLAV GTIGLLLGIF YYPVATVFID SVLVDGRWTG  60
   61 RVFVSILQDP FYFGEPARLL AGEQVGAVIE SVLSPDRRLG VIGFTAYQAA LSTVASVALG 120
  121 LPAAYLLARY EFPGRRTLRS LTILPFVLPS IMVGVGFVAT FGRNGTLNAV LGALGLGQVN 180
  181 LLFTLEAVVI AHAFYNAPLV ARVTTAAWES VDASAVETAR SLGASPFRAF RDVVAPQLYP 240
  241 SVLMGAALTF VFTFSTFPIV LALGGFQLAT VEVFVYRLIR DLEYAEAAAL ALIELGISLG 300
  301 LLYAYLRYEA KHTVRSRGIR PLPRRQLRPP SLSVRELLPR LGLAVYAVVA LAVFVAPIAS 360
  361 MVLASLSGPE GLTLANYQFL IDRQTTGASF QVQPWDAVRN SLLFGIASLA VALPMGVVVA 420
  421 VLTTRDYRGR KLVDAVAMAP LAVSGIVVGL GLLRGLVFGV EVGGTRLAVG GGFAIIAAHA 480
  481 VAGYPFVVRT VAPGLEGIDH RLVESARALG APRARALLDI ELPLVWPAVI AGAAFAFAIS 540
  541 IGEFSATIVL ASGTNQFTMP IAIERFIGRR LGPATAMGVV LLVVTSASFL LIDRLGGDEV 600
  601 GF