YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22538058, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.52
Transmembrane Helix	28	49	0.84
Cytoplasmic	50	55	0.48
Transmembrane Helix	56	77	0.87
Non-Cytoplasmic	78	82	0.51
Transmembrane Helix	83	104	0.87
Cytoplasmic	105	119	0.55
Transmembrane Helix	120	141	0.86
Non-Cytoplasmic	142	147	0.56
Transmembrane Helix	148	171	0.90
Cytoplasmic	172	177	0.55
Transmembrane Helix	178	200	0.79
Non-Cytoplasmic	201	211	0.68
Transmembrane Helix	212	235	0.86
Cytoplasmic	236	271	0.75
Transmembrane Helix	272	292	0.67
Non-Cytoplasmic	293	296	0.71
Transmembrane Helix	297	316	0.89
Cytoplasmic	317	327	0.90
Transmembrane Helix	328	351	0.87
Non-Cytoplasmic	352	358	0.84
Transmembrane Helix	359	380	0.93
Cytoplasmic	381	390	0.76
Transmembrane Helix	391	410	0.69
Non-Cytoplasmic	411	420	0.56
Transmembrane Helix	421	444	0.83
Cytoplasmic	445	445	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVKVVNNE DSRGQKQDLK AKLFHIKIGS VPLPVYVCLA LLILLAGFLQ KLPVNMLGGF  60
   61 AVILTMGWFL GTIGASIPGF KNFGGPAILS LLVPSILVFF NLINKNVLES TNMLMKQANF 120
  121 LYFYIACLVS GSILGMNRKM LIQGLLRMIF PMLLGMVCAM MVGTFVGVIL GLEWRHTLFY 180
  181 IVTPVLAGGI GEGILPLSLG YSSITGVASE QLVAQLIPAT IIGNFFAILC TALLNRLGEK 240
  241 KPHLSGQGQL VRLNKGEDMS DIIADHSGPI DVKKMGGGVL TACSLFIFGH LLQQLTGFPG 300
  301 PVLMIVAAAI LKYINVIPRE TQNGAKQLYK FISGNFTFPL MAGLGLLYIP LKDVVATLSI 360
  361 QYFIVVISVV FTVISVGFFV SRFLNMNPVE AGIISACQSG MGGTGDVAIL STADRMNLMP 420
  421 FAQVATRLGG AITVITMTAI LRMLF