YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76587007, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHKLKAFTL ALLSIFFVFG GKVSAETVNI VSDTAYAPFE FKDSDQTYKG IDVDIVNEVA  60
   61 KRAGWNVNMT YPGFDAAVNA VQSGQADALM AGTTVTEARK KVFNFSDTYY DTSVILYTKN 120
  121 NNKVTNYKQL KGKVVGVKNG TAAQSFLEEN KSKYGYKVKT FDTSDLMNNS LDSGSIYAAM 180
  181 DDQPVVQFAI NQGKAYAINM EGEAVGSFAF AVKKGSGHDN LIKEFNTAFA QMKSDGTYND 240
  241 IMDKWLGKDA TKTSGKATGN ANEKATPVKP SYKIVSDSSF APFEYQNGKG KYTGFDMELI 300
  301 KKIAKQQGFK LDISNPGFDA ALNAVQSGQA DGVIAGATIT EARQKIFDFS DPYYTSSVIL 360
  361 AVKKGSNVKS YQDLKGKTVG AKNGTASYTW LSDHADKYNY HVKAFDEAST MYDSMNSGSI 420
  421 DALMDDEAVL AYAINQGRKF ETPIKGEKSG DIGFAVKKGA NPELIKMFNN GLASLKKSGE 480
  481 YDKLVKKYLS TASTSSNDKA AKPVDESTIL GLISNNYKQL LSGIGTTLSL TLISFAIAMV 540
  541 IGIIFGMMSV SPSNTLRTIS MIFVDIVRGI PLMIVAAFIF WGIPNLIESI TGHQSPINDF 600
  601 VAATIALSLN GGAYIAEIVR GGIEAVPSGQ MEASRSLGIS YGKTMQKVIL PQAVRLMLPN 660
  661 FINQFVISLK DTTIVSAIGL VELFQTGKII IARNYQSFRM YAILAIMYLV IITLLTRLAK 720
  721 RLEKRLK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle