YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21108736, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLRLLALTL SITLLSGCGG AGAPGSADAQ AKVLNVYNYS DYIAEDTIPA FEKSTGIKVT  60
   61 YDVFDSDEMV ETKLLAGGSD YDVVVPTLNF FGRQIQAGVF LPLDKSKIPN LVNLDPDVMR 120
  121 RIAAQDPNNA YGVPYMIGTT GIGYNVDKLK AIFGNTDVAN SWDLVFKPEN LSKLKDCGVT 180
  181 ILDTPSDMIP IALNYLGLDP HSTTPAEIEK AAALIKAIRP YVQNFHSSQY VTSLANGNTC 240
  241 LAVGWSGDII QARDRAAEAG NNIKVAYAIP KEGAPQWFDM LAIPKDAKHP DNAYAFINYL 300
  301 LKPDVAAANT NFIHYANPVR TATPLVDAAI RNDPTIYPPP EVTAKMFTYA INPPDVDRLY 360
  361 TRLWTEIKTG H

Type	Start	End	Confidence
Signal Peptide	1	29	0.88
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	371	0.99