YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21107476, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHDHNHAPS EIRHEAPLWW ALGLTATFLL AEIVGAFVTN SLALLSDAAH MATDTVGLMI  60
   61 ALVAVRLSRR PADARRTYGY VRLEALGALA NGALLFAVGA YILWEAAQRF RAPQDISSSG 120
  121 MLLIAGFGLV INLVAMKLLH AGSGESLNVK GAYLEVWSDM LGSVAVIVGA LLIRWTGWQW 180
  181 IDPVLAVLIG LWVLPRTWVL LREAINVLLE GVPKGIDLAQ VQQALTSHPG VEDVHDLHVW 240
  241 ALASSTPALT AHIVVNEATD RDRLRDALGA LLHERFDIAH VTLQVESGDC GTEPCGTPKP 300
  301 AADAGHDAHH EHGHAHGHSH H

Type	Start	End	Confidence
Cytoplasmic	1	17	0.95
Transmembrane Helix	18	39	0.93
Non-Cytoplasmic	40	47	0.78
Transmembrane Helix	48	67	0.93
Cytoplasmic	68	84	0.79
Transmembrane Helix	85	104	0.93
Non-Cytoplasmic	105	118	0.83
Transmembrane Helix	119	139	0.89
Cytoplasmic	140	152	0.87
Transmembrane Helix	153	173	0.90
Non-Cytoplasmic	174	179	0.70
Transmembrane Helix	180	200	0.85
Cytoplasmic	201	321	0.95