YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21241796, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDMVLGVII LVSALLGLLR GFVAIVVGTL SWLLAGWATF MFGGAAARWL ADGKHPSATE  60
   61 SFGGYAMVFV GVLITVAVIG MVIRAGVDAI KLGGTDRMLG FGLGVVRGAF LASVLVLLMG 120
  121 FTPLPREPAW RQSVLLPMLQ PGAGWMRAQL PAWRMPSMEM PSMELGNLPT ELGKLPSAGD 180
  181 NTDLGKALGG SGLSDTITRA LARALGKPGK TAGDGRDPTQ AMPANIDPAQ VRGGESDPAR 240
  241 VESQGQARPP SQ

Type	Start	End	Confidence
Cytoplasmic	1	6	0.74
Transmembrane Helix	7	41	0.75
Non-Cytoplasmic	42	61	0.56
Transmembrane Helix	62	87	0.85
Cytoplasmic	88	98	0.63
Transmembrane Helix	99	122	0.87
Non-Cytoplasmic	123	132	0.52
Transmembrane Helix	133	148	0.37
Cytoplasmic	149	252	0.62