YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21106611, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.68
Transmembrane Helix	6	26	0.93
Cytoplasmic	27	44	0.62
Transmembrane Helix	45	62	0.81
Non-Cytoplasmic	63	63	0.27
Transmembrane Helix	64	82	0.65
Cytoplasmic	83	91	0.48
Transmembrane Helix	92	109	0.58
Non-Cytoplasmic	110	114	0.72
Transmembrane Helix	115	138	0.86
Cytoplasmic	139	149	0.85
Transmembrane Helix	150	168	0.94
Non-Cytoplasmic	169	179	0.74
Transmembrane Helix	180	200	0.95
Cytoplasmic	201	218	0.93
Transmembrane Helix	219	239	0.93
Non-Cytoplasmic	240	246	0.76
Transmembrane Helix	247	268	0.93
Cytoplasmic	269	286	0.96
Transmembrane Helix	287	305	0.63
Non-Cytoplasmic	306	310	0.48

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHQQTLWLFS GIALVLIIAT LISETLRWRA RERPSAVLDN LVARIRAWWV MAAVVGLAFV  60
   61 FGRAGVIGLF ALVSLFALRE FITLTPTRRG DYYALLAAFY VVLPWQYGLV WTGWYGLYTL 120
  121 LIPVYAFLVL PILATIGGDT TRYLERTAKV QWGLMICVFC ISHVPALLNL DIPGYAGRNL 180
  181 LLIAFLVIVV QSSDVLQYVW GKLAGRHLIA PKLSPSKTVE GFIGGVVSAS LLGMALWWIT 240
  241 PFAPWHAFGL ALVANLMGFF GGLVMSAIKR DRGIKDWGHM IEGHGGVLDR LDSVCFAAPV 300
  301 FFHLIRYGWA