YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21241232, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTRLPLRRR VFPSPPLSVT VFVFWLLLSD SFGPQQWVLG MLLGVVVPIF AARLDREFAQ  60
   61 IGSLRSVPRM LLVAAGDIVR SNIKVAAQVL GPESHIHPGF IWVPLDIANI HGIAALTSMI 120
  121 TLTPGTVSAA LSDDRKYLLV HVLHLDDPEA LIAEIKTRYE KPLMEIFP

Type	Start	End	Confidence
Cytoplasmic	1	10	0.88
Transmembrane Helix	11	29	0.90
Non-Cytoplasmic	30	35	0.79
Transmembrane Helix	36	54	0.84
Cytoplasmic	55	70	0.76
Transmembrane Helix	71	87	0.38
Non-Cytoplasmic	88	106	0.46
Transmembrane Helix	107	127	0.56
Cytoplasmic	128	168	0.78