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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|17233320, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTITRTGGAS GAVSVTLTPT NGSAIAPDDY SNTPITVNFA NGETSKTVNL TQVSKALSFD  60
   61 GVNDYVNVGA KSGLEVSTDI TIEAWINPTG SGSSTIEGGI IVNKEGEYEV ARFSDGTIRW 120
  121 AFANNNPTWL WINTSYVAPL NQWTHIAVTY ELGVIKTYSN GVLVHTYNGS GNIGDFHANE 180
  181 DDFRIGGRQI GNQLFQGSID DVRIWNKART QAEIQADLIR ELTGKETGLI GYWNFNSING 240
  241 TTVQDLTGNQ NNGAVLEAQN VIGIVTTSLI TDDSIYEPTE TINLTLTNPT NGANLGTQKT 300
  301 ATLNIVDNDA VAGIFQFNNV SYAINENGTL VTAVTLNRTG ESDGAVSVTV NLSNGSAIAS 360
  361 VDYDNTPITV NFANGETSKI VTIPIVNDNQ FEPNETINLS LSNPTGGATV GTQNTAILTI 420
  421 VNDDLPQPGT INFNINNYTV NENGTASINL VRTGGSDGEV SVTLTPSDGT ATAGSDYNNL 480
  481 PITVTFANGE TSKTINLISQ NQGLFFDGND YVDNPANFSE TKDTFTIELW ANPTATRAST 540
  541 PETSSGVNAF FNQKYAIFPK QGLGTLGTSN DVYAGISIGT NGVTISEHTL NYMPSVLVYN 600
  601 TALSGWNHIA LVYENKTPKL YINGQFIKAG LTSQYIVHPS SLFGGTSIRQ EDWSFKGSID 660
  661 DVRIWHKART EEEIKAGLNR ELTGNESGLI GYWNFNSING NIVQDLSTNK NNGTFFGAQS 720
  721 TAGFSTSFII NDNIYEPIET VNLTLTNPTG GATLGTQKTA NLNIVDNDAI AGTIQFSNAN 780
  781 YAVNENGTAV NAVTLNRTNG SDGVVSVRIN LTNGTATAGS DYNNSPITVN FADGENSKTV 840
  841 TIPIIDDSIL ESNESINLTL ANPTNGATIG TQNSAVVNII DNDLKPTLTV NITAEQLTEG 900
  901 NTIQGTVTRN TDTTEPLTVT LVNSDNTQIT VPTTVTIPAG ANSVNFSITA VDDNLIELPR 960
  961 NYSIIASAPG FISGSDSVGV IDNDAVTLSL TVDTTNINEN GGKAIATITR NIVTDIPLVV1020
 1021 QLSTSDTTEA TVPATVTIAA NQASATFEIQ GVDDTIVDGT QAVIITARPI YTNTNVAVPT1080
 1081 GNATANLNVV DNESPSLKLT IDRDLISETG TATAIITRNT NTDSALVVTL NSSDTTEATV1140
 1141 PNTVTIAAGQ TSATFTITGV SDGINDSSQN VTITAAANGL NSGTDSLEIT DINVPDLTIT1200
 1201 NLQGIQPTYT GKQSQFTYTV ANNGIIAASG SWKDRVYLSR DNKLDASDTL LGGFALGSAE1260
 1261 NPANLLSGTS YDRTVTYFAP RTPGQYYLIA STDTDNTVNE GVGIGENNNT TITPVTVTPA1320
 1321 YRAIVSTDTE TALAGNSVIL RGQAISNSDN SPVAFEFVKV RVENKGTIRE FDSFTDANGN1380
 1381 FVRQFNPLPG EAGTYNINAY FPAFAAEDNA AEDQFTLLGM RFEQNDQFLQ QVTQKIVEGT1440
 1441 TFNGQVKLQN LSNVGLSGLT ASIIDAPSNW IVEVTPQKTS LAGNEEITVN YNITVPDDSL1500
 1501 LYDQLQIRLN TTEGVTATLP VTVNVEQILP RLVADTSSLQ ASMLRGGQTL VEFTVTNQGG1560
 1561 IASGELDVLL PEASWLKLAS PVEIPTLNPG ESTKVSLLLQ PSATQELTVY NGDLVIAGAE1620
 1621 TSLRLPFNFR AVSEAKGNLN INVVDELFFF AEGSPRLENA TITLIDPFNG KVIFSQRDAD1680
 1681 GILSFTDLVE GYYTLRINAD NHDSYQQNIY IGAGETENIQ AFLSRQTVKY TWTVTPTEIE1740
 1741 DRYTISVQST FETDVPIPVV TINPPLIDLK DLQVIGQIMQ IDMTVTNHGL IAANDIKLNF1800
 1801 GSHPFYKIEP LINDVDILSA KSFLTVPIRI TRIADFDTLP NGQSELSLAS TPQVPCSISS1860
 1861 SIIYSYPCGD IDVQRSTTIV INNVEGNCGG GLPSIGIGGG GAGGAGGAGG GVFVYSSTPI1920
 1921 IYASNPCNTD PDNPPNEPDC NYPDMLDTFS DKYDDKRGTA TAGYHHQVLC IAEKAAGNNW1980
 1981 GQGFVKKILC QMANDLKNGR GSTRELDYLT DLIPPWIPVS SPGVPTTGDI GSLGAGGFHF2040
 2041 IRDLLPGFTR AICNGSYNRS EHEGFFNQGV VPCFNEVAAS GEMSQFAADI AQRVVPDGAD2100
 2101 LMVTYLTARK DDGTLNCSGF GSQSLIAETS PNLLPQNYQQ IQPSSLTKDQ LFSEELASSS2160
 2161 VLKIEIDDLF FLSVGEQFQL KVSKNNLDGT ISDLTSSLTG TQYFVVADNQ ISQISTDGLL2220
 2221 SILSSSFPLV QFTPILYVIA RNGDDFGIGQ FAIQDSDNDG DGLADSYERK IGLDSNVSNN2280
 2281 KNSDLDGDRL NDFYEALIYS NPLVKDTDGD GVDDGIEEQN GRDPNNPDPK DNTQGVCAQV2340
 2341 KIQIDQEAVM TRAAFLGTLE IDNGNISNLE NLSVTLQVKD AQGNIVNDLF GITNPVLKNI2400
 2401 TAVDGTGILI KDDPTTTVDE GIGSAQWTFI PTNLAAPETA TQYSIGGTLS YKENGTTVTV2460
 2461 PLLSTPITVY PQAELYLDYF HQRDVFADDP FTNDIIETSV PYSLAVLVRN EGKGEAKNLK2520
 2521 ITSGQPKIVD NEKGLLIDFQ IIGSEVNGTG VSPSLTVNFG NIAAGQTAVA DWLLKSSLQG2580
 2581 KFIDYKATFE HINNLGKAEL SLIKDVKIHE LTRKVQINQP TDDGLPDFLV NDIFDANFTP2640
 2641 DTLYFSQGGT APVNAITNAT SDAPATLGDL SVQISTTVNA GWNYFRLADP SNAQFDIQKV2700
 2701 LRADGSEVKL DNVWTTDRTF PATGRPIYEN ILHFLDRNST AGNTTYTVIY TPGGPSITDI2760
 2761 IDVSPDPRST AVNAITVDFS EAVKADTFDI SNITLTLDGG ANLITSGVGI VAQSPTRFQI2820
 2821 IGLSNLTNLD GTYQLTVNAA GIADIGGKLG AGAVSETWIK TATGNADTTA PIVTDVVDLL2880
 2881 AKTRNQPVSS LNVTFSEKID LSTFNWQDIT LTRNGGANLI TNAVTISAIN DTTYRINGLS2940
 2941 GLTTTDGNYT LTANGSGIQD LSGNAGTGTQ SETWVMDTVA PTVPSNISVT ATPSPASLQT3000
 3001 TSASLGVLNQ FGQIRVNSTS VTVTGDLGET GLRVSLIDKT TSQTLGQATV TGTSFSSNIQ3060
 3061 LLSPGNRDVD LQVQDVAGNI TTTTLSLFAD ITKPTITDFL NVPQNSVTTP VNFIDVRFSE3120
 3121 QINLNTFDRN DITLSRNGEN LTLPNTVTVE YLSGTTYRIN GLSNFNTPGT YQLQVDATTV3180
 3181 QDNAGNSGDA ARTTTFTIAA PPTPGVTITQ SGGSTAVIEG GNTDSYTLVL RTQPTADVTV3240
 3241 TLNTGSQITT DKTTLTFTSA NWNTPQTITV NAVNDTITEG NHTSTISHSI SSTDTNYSNV3300
 3301 TLPDIAVSIT DNDAEIRGMK WNDIDGDGVK DTGEPGLQGW TIYLDSNTNG QLDNGEISTT3360
 3361 TDANGNYQFT NLRPGVYTVA EVQQPGWKQT FPGTNITTTN ADIPLAIPSL DMISPGDSNG3420
 3421 IQLNFSAANY IVKEDGTAIT EVWVTRTGNT SSAVSATLSF TDGTATGCGC GASSVNNDFN3480
 3481 NVPFTIAFAE NETSKLISVQ NALLANPNAI KIRNDSKVEG NEYFTIKLTN PTGGAVIGNQ3540
 3541 SIATVTIIDD EAPSDITVTP PLETPSTTIT SAVDSQAIYL INLNNFWADS RFANIKGNDF3600
 3601 TSVIIDTGID LNHPFFGADT DNNGIADKIV YQYDFADNDA DASDRNNHGS HIASIFSSVA3660
 3661 PNSDIIVLKV FKDNGAGSFA DLEKALQWVA ANSNTYNIAS VNLSIGDSQN WTTATGRYGI3720
 3721 GDELSAIASN NIIINAAAGN SFYQYTSNPG LAYPAIDPNV IAVGAVWADN FGGPKNFVGG3780
 3781 AIDYTTTADQ IASFSQRHPE LLDIFAPGIL ITGANANGGT TTLGGTSQAT AYLTGVATLA3840
 3841 QQIAQEKLGR KLTVTEFRNL LDTTSVIIND GDNENDNVTN TGFNYPRVDL LKLAEAILSL3900
 3901 TGTTPNPDPV NPGNNNNNNG TTTSDNTINQ VHTVNLAAGQ VRTDVDFGNQ QIITNQAPTV3960
 3961 ANAIADQIIN EDANFTFVIP ANTFVDADAG DVLTYSTTLP SWLTFNATTR TFSGTPGNSN4020
 4021 VGTVNITVTA TDSTGASVDD SFTLTVANTN DAPILGLAIA DQSTASNTPF TFQIPLNTFS4080
 4081 DIDTGDTLTY SAKLVGDIPL PTWLTFNATN RTFSGIPGNV DVGTLNITVQ AIDTSNASIS4140
 4141 DSFVLTITNL INNIVGTSGN NTLAGTPNND NIQGLGGNDI IFGLAGNDTL NGGTGSDTMT4200
 4201 GGLGDDTYIV DNNVDKVVEN LNEGIDTVRS SISYTLLENV ENLILTGTSN ISGTGNILSN4260
 4261 IITGNSGANT LNGKAGDDIL NGEGGNDNLK GEDGNDVLNG GAGNDILDGG LGDDVMTGGV4320
 4321 GNDIYYVDSS NDIIIDELNE GTDTVNTIIT WTLGNHLENL TLIGSSAING TGNALKNIII4380
 4381 GNSADNILSG GDNDDILRGG EGNDTLYGGA GNDSLDGGIG NDSLNGEDGN DNLKGDVGND4440
 4441 ILNGNAGNDT LDGGLGDDVM TGGAGNDIYF VDSSNDTIIE ELNEGTDTVN ASINWTLGNN4500
 4501 LENLTLTGSN GINGTGNALK NIITGNNGDN ILSGGDNDDT LRGNAGNDTL FGGSGNDSLS4560
 4561 GGIGDDILNG ADGNDNLKGE AGNDTLDGGA GNDSLDGGLG DDVMTGGAGN DTYFVDSSND4620
 4621 TIAEETDGGS DTVNASVSWT LDDNLENLTL TGSNAINGTG NALRNTITGN SADNILSGGD4680
 4681 NDDTLRGNAG NDILNGGAGN DSLDGGLGDD VMTGGASNDT YFVDSSNDTI IEEADGGTDT4740
 4741 VRASITLTLG DHLENLILIG NSPIDGTGNA LRNNITGNVA NNILSGGADN DTIISGDGDD4800
 4801 TLYGDSGNDT LTGGNGNDIL VGGMGSDRLT GGNGKDTFAF SAPITDGIDT ITDFNPLDDL4860
 4861 LRVDAAGFGG GLVAGTLLAS QFVLGTAAKT TSDRFIYNQS TGALFFDVDG TGSSSQVQIA4920
 4921 TLSNKPVINA TNISVI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle