YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33358316
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQPVVRVGE WLVTPSINQI SRNGRQLTLE PRLIDLLVFF TQHSGEVLSR DELIDNVWKR  60
   61 SIVTNHVVTQ SISELRKSLK DNDEDSPVYI ATVPKRGYKL MVPVIWYSEE EGEEIMLSSP 120
  121 PPIPEAVPAT DSPSHSLNIQ NTATPPEQSP VKSKRFTTFW VWFFFLLSLG ICVALVAFST 180
  181 LDTRLPMSKS RILLNPRDID INMVNKSCNS WSSPYQLSYA IGVGDLVATS LDTFSTFMVH 240
  241 DKINYNIDEP SSSGKTLSIA FVNQRQYRAQ QCFMSIKLVD HADGSTMLDK RYVITNGNQL 300
  301 AIQNDLLESL SKALNQPWPQ RMQETLQQIL PHRGALLTNF YQAHDYLLHG DDKSLNRASE 360
  361 LLGEIVQSSP EFTYARAEKA LVDIVRHSQH PLDEKQLAAL NTEIDNIVTL PELNNLSIIY 420
  421 QIKAVSALVK GKTDESYQAI NTGIDLEMSW LNYVLLGKVY EMKGMTREAA DAYLTAFNLR 480
  481 PGANTLYWIE NGIFQTSVPY VVPYLDKFLA SE

Type	Start	End	Confidence
Cytoplasmic	1	158	0.93
Transmembrane Helix	159	181	0.92
Non-Cytoplasmic	182	512	0.92