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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25297728
Protein type: Transmembrane
Type Confidence: 0.86
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLRTFEDK QPQIRTSPSL EFWKGVGQIT GCTLLSITTL TSSVLAGGLL GLAISFRDLP  60
   61 SVRTIRNFVP AETTYIYDIK GRLLASIHGE VNREVVPLKK ISPHLKRAVL ASEDTSFYHH 120
  121 HGIDPVGIGR ALVVNLEAGE VQEGGSTLTM QLVKNLFLSQ ERTFTRKIAE AVLAIRLEQV 180
  181 LSKDEILDLY LNQVYWGDNN YGVQMAARYY FNKSAANLNL AESAMMAGLL PAPENFSPFI 240
  241 NLELAKQKQK EVLLRMLELN WISQQDYNQA LKQKIQLNNK RTLEGSAAPY ITNSVAQELV 300
  301 RRFGRDVLLK GGLRVQTTID AQFQMMANKT VKRWHQRLKR QGLRNNQIAL VAIDPRTHFI 360
  361 KALVGGVDAK TSEFNRATQA RRQPGSAFKP FVYYAAFASG KFTPNTIVQD TPVRYRDGNG 420
  421 WYSPRNYDNS FMGAIPIRTA LSLSRNIPAI KLGKAVGLNR VIETSRTLGI TSPMEPVTSL 480
  481 PLGAIGVTPV EMASAYATLA NYGWQSPTTL IMRVSDSNGN VLIDNTPKPR LVLNPWASAS 540
  541 VIDVMQSVIN NGTGRAAAIG RPAAGKTGTT SSERDVWFVG TVPQLTTAIW VGRDDNKRLG 600
  601 YGATGGGTVA PIWRDFMQNA LKNLPVENFK RPSNFPRPRP NKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle