YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25302934
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSITVEILI ILVLIVANGI FSMSEMAIVS ARKVRLQQLA NQGDPKAKAA LKLAESPNNF  60
   61 LSTVQIGISL IGILTGAFGG ATIASRLAVY VRLVPFLTPY SEPVSFGIVV LIITYLSLII 120
  121 GELVPKRLAL NSPERIAAIV AIPMRALATL ASPAVHLLSA STDMVLRIMG ITPSLEPQVT 180
  181 EEEIKILIEQ GTEAGTFEEA EQDMVERVFR LGDRPVSSFM TPRPDIVWLD LEDTTEENRQ 240
  241 KMSENGYSRY PVCQGGLDNV LGIIPVTDLL ARSLRGDSLD LTVGLRQPVF VPESTRGLKV 300
  301 LELFKQTITH MALVVDEYGV IQGLVTLNDI MSEIVGDVPS ADGEEDPQAV QREDGSWLLD 360
  361 GMLAVEEFFE LFGLEEWDFE ERGSYQTLGG FVITHLGRIP AAADHFEWQG MRIEVMDMDG 420
  421 NRVDKVLVVP TKNKVADTQK AD

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.77
Transmembrane Helix	8	29	0.91
Cytoplasmic	30	60	0.86
Transmembrane Helix	61	84	0.83
Non-Cytoplasmic	85	103	0.71
Transmembrane Helix	104	124	0.90
Cytoplasmic	125	135	0.81
Transmembrane Helix	136	158	0.74
Non-Cytoplasmic	159	442	0.89