YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17232676, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTETNNLNST LQDVSRRELR DLVRTQMRML LEAGDLQGAK AILVPVQPAD IAEAIEGLPE  60
   61 TMHALAFRLL SKDEAIEVYE YLDYSVQERL IEELKSQEVR DIVDQMSSDD RARLFDELPA 120
  121 KVVNHLLEQL SPTERQATAL MLGYEADTAG RIMTLEFIAL KENMTIGQAL ERIRSLANAS 180
  181 EMIYYLYVTD QARRLTGIVS LRELVTSQPE QTIGEVMTRD VIFVNTDTHQ EEVARLIQRY 240
  241 DFLAVPVVDR QQLLVGIVTV DDVIDILEEE TTKDIYALGG GVQSSGDNYF QMDLWEVARK 300
  301 RVLWLFVLLI TNTVTGTIIK SQEDILTKVV TLTAFIPLLT GTGGNVGAQS STVVIRGMNT 360
  361 DEIRSLGPLQ VIGREAIAGA LLGGMLGSIA TIWAYFLQGR IEVAIAVGAS LIAISVLASI 420
  421 SGSALPFLFR YLRLDPALMS APFITTAVDV LGVLIYFNLA RVILRL

Type	Start	End	Confidence
Non-Cytoplasmic	1	301	0.52
Transmembrane Helix	302	319	0.65
Cytoplasmic	320	328	0.32
Transmembrane Helix	329	348	0.57
Non-Cytoplasmic	349	375	0.68
Transmembrane Helix	376	397	0.94
Cytoplasmic	398	403	0.67
Transmembrane Helix	404	429	0.86
Non-Cytoplasmic	430	437	0.65
Transmembrane Helix	438	460	0.88
Cytoplasmic	461	466	0.64