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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25533334
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKIMPVSNT KPSLQRQIKT MIRSSVQTAQ KLPLRLILVV PFVLQIFTAV SLVGYLSFKN  60
   61 GQKAVNELAD QLIVKVNGLV DQHLDSYLAA PLQINQINVD ATNLGMLNLE NFQTTGRYFW 120
  121 QQMQVFNVGY ISFANLQGEF IGVERLDKGG LLINEVSQKN GIGKLYVYTT NNQGDRQQLI 180
  181 AVKDYDPHVE AWYADAVKAG KPVWSQIYSW EDKPEVLSIS ASYPINDNNN KFFGVISVDL 240
  241 ILSQINSFLA NLKVGQTGQI FILERSGMIV ASSTSEAPYK VISGKAQRLS AHQSQNYLLR 300
  301 ETTDYLQQKF GQLKNVKSYQ QTVLQLQHER HFVQVRPWND KLGLDWLVIV VVPESDFMGQ 360
  361 INTNNRTTIL LCLWALIIAT AMGVYTSRWI ARPIVQLTQA SSAIASGNLD QEVRVSGLKE 420
  421 LSTLATSFNQ MAGQLRDSFA ELEKTNQELE NRVAERTAEI TAAKEVADAA NRAKSEFLAN 480
  481 MSHELRTPLN GILGYAQILQ LDSNTNDEQM QGLNTIYECG SHLLTLINDI LDIAKIEAKK 540
  541 LELYPQEFDL GRLLLGVCEM CHIKVEQKGI SFKYQFNDYI PSKTFADEKR IRQVLINILS 600
  601 NAIKFTDNGT VTFDVEVVAC TGTKLITNTN QILPVHQLRF QIEDTGIGMT DEQLKKIFLP 660
  661 FEQVGDNLHK SEGTGLGLAI SSQILELMGS DIKVESVYGK GTKFWFDLDL PIIDTGKISL 720
  721 SVESQKNIIG YEGKTKSILI IDSSWEKRDI FANLLSSLGF KLTEVSNLQE SLDKIKAEHP 780
  781 DLIIADIAMP EINNLQATTM MRSQVEFAKL VIIASSASVS EYTRQQSQEA GYDDFLAKPV 840
  841 KVEDLFNMLQ TYLSLKWIYS PNDDSSAKIS SIEEIIFPPP TELVNLYQAA KAGYVVGIQE 900
  901 EITRIQQLDK KYTRFTVKVS ELIAEFEDEA IVSMIQPHLS Y

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle