YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25534012
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.93
Transmembrane Helix	17	39	0.86
Non-Cytoplasmic	40	105	0.89
Transmembrane Helix	106	127	0.91
Cytoplasmic	128	134	0.79
Transmembrane Helix	135	157	0.81
Non-Cytoplasmic	158	181	0.72
Transmembrane Helix	182	205	0.86
Cytoplasmic	206	212	0.75
Transmembrane Helix	213	234	0.94
Non-Cytoplasmic	235	288	0.62
Transmembrane Helix	289	308	0.92
Cytoplasmic	309	316	0.46
Transmembrane Helix	317	332	0.64
Non-Cytoplasmic	333	335	0.71
Transmembrane Helix	336	356	0.81
Cytoplasmic	357	362	0.72
Transmembrane Helix	363	390	0.80
Non-Cytoplasmic	391	408	0.40
Transmembrane Helix	409	428	0.90
Cytoplasmic	429	434	0.43

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEKRIFIKK ILWKTDFLLP GILWFLSRIL IWITMLLVAP NLPSAPESLP SLSWEVFDAW  60
   61 DSVHYRAIAT TGYQFVDDGK QHNLAFFPLF PLCIRLLMNL GLSFELAGLL INNVTFLAAL 120
  121 YVLYFWLKNA YGISIARWAT AVVSCYPSAM FTGVIYTEGL YLFLSTAALR AFDQKQYGWT 180
  181 GFWGALATAT RPTGMAMIPA FAIAAWKERR RTIAYIAGLA TAIGVTVFSL YCAIRFHNPL 240
  241 AFIAAQRGWR PSLGFDWQGW LGMLMKIVVG SQNWQFGWVK PTSGLINDPW HPLLFILFVG 300
  301 GGYCLYFFRQ YLNSSKVIYG CYSLVLFWLL LAPEDLINHL LNVFMVFGGS YALWCFREKL 360
  361 TPVTVMYGFC GIGLLLASGG TISLSRLAYG IVPLSIAIAM LLSRYPRQGY FVLGLFITLL 420
  421 ARLAVGFAQK QWVG