YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17231602, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRKLRRLAK AVNKPYKDEF YHYPGTIPGT IIIDADAPPP EIDLIDYSQT DFTHQRVATP  60
   61 EECLPYLDTS SVTWVDVQGL GNQDILERVG QVFELPPLVL EDVVNVSERP KTEDYDDQLL 120
  121 FIARMVVPKE RESGFYSEQV SLILGKHYLL SIQEEPEHDC FAGVRMRIEK GKGTIRRQGA 180
  181 DYLAYALLDA IIDGFFPVLE RYGEALEDLE EEVIVSPSRQ TLQKIYHVRR ELLQLRRAIW 240
  241 PQRDAINALI RDRSQLISPE VQIYLRDCYD HAVQVMDMVE TYRELASGLM DVYLSAVSNK 300
  301 MNEVMKLLTV VSSIFIPLTF VAGIYGMNFN TEKSPYNMPE LNWYWGYPLC LGVMGAIAFA 360
  361 LLFLFWKRGW LENSSMIERD

Type	Start	End	Confidence
Cytoplasmic	1	306	0.98
Transmembrane Helix	307	327	0.93
Non-Cytoplasmic	328	343	0.94
Transmembrane Helix	344	366	0.95
Cytoplasmic	367	380	0.96