YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17133235, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.55
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHIFQQVFR MKKLLIRLIL PFLAIILAAS LSSAPALASG VYQIPNLTAG DSTWVLDQGD  60
   61 VISRINEGAI SSSLEDLAKE TGKEVRFVTI HRLDYGETPE SFAQALFEKW FPSKEAQANQ 120
  121 ILLVLDTVTN GTAIITGDEV KPLLTDTIAN SVAEETLAAP LRDGNKYNQA FLDASDRLVA 180
  181 VLSGQPDPGP PQIVDKVQVE GTFKKAEETD KGNATAWVVG LLIAATIIPM ATYYIYLAVQ 240
  241 PSSEG

Type	Start	End	Confidence
Signal Peptide	1	38	0.98
N-region	1	29
H-region	30	35
C-region	36	38
Cleavage Site	38	39
Non-Cytoplasmic	39	215	0.99
Transmembrane Helix	216	237	0.53
Cytoplasmic	238	245	0.52