YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25313623
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNPNLEDIQ LTKDDYERYS RHLILPEVGV EGQKRLKAAS VLCIGTGGLG SPLLLYLAAA  60
   61 GIGRIGIVDF DVVDTSNLQR QVIHGTSWVG KPKIESAKNR IHEINPYCQV DLYETRLSSE 120
  121 NALDIIKPYD IVVDGTDNFP TRYLVNDACV LLDKPNVYGS IFRFEGQATV FNYEGGPNYR 180
  181 DLYPEPPPPG LVPSCAEGGV LGILPGIIGV IQATETVKIV LGNGNTLSGR LLLYNALDMK 240
  241 FRELKLRPNP IRPVIEKLID YEQFCGIPQA KAAEAQKMQE IQEMTVTELK ELLDSGAKDF 300
  301 VLLDVRNPNE YEIAKIPGSV LIPLPDIENG NGVAKVKEAL NGHRLIAHCK LGGRSAKALA 360
  361 ILKESGIVGT NVKGGITAWS REVDPSVPEY

Type	Start	End	Confidence
Cytoplasmic	1	40	0.63
Transmembrane Helix	41	60	0.62
Non-Cytoplasmic	61	390	0.96