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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|17230279, gi|...
Protein type: Transmembrane
Type Confidence: 0.77
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAISGMGGIG KTELATQYAR RYQANYDGVA WFNDRANNLA AGILESFIGL GLEIPQELGG  60
   61 RLLTLKEQIA WCWLQYAESL LPILIIFDDV TDLANLREVI PTDNRFRVLV TTRLRNLEPN 120
  121 FIQDIPLDVL SPEKEPDKAL ELLKGLLGNT DRRVDNQPVF ANAICKSLEY LPLGIELVGA 180
  181 YLRQDPDLFL DVMLEQLQQR KLAEAALQNR ETLTSTQLGV KAAFALTWSE LDPLAQQLGR 240
  241 FLSLFSPQSI LWDLVVWVAT SGGEEEDDPS PNLSPTRGEA LIPPCPGREG GLGGLGLSAE 300
  301 ELNEAKKQLY KRNLLQLVQD SQGYYQIHTL VRWFLQEQLT DAWEMKAVLE NTFAWAMINK 360
  361 AQSLPPLPTS KDIERIKDVV PHIEDLGNRV IDDINQAGEE QINSPASVPN DEVIWVFVGV 420
  421 ARFYNGQGLY QLAEPWNQEC LKVCQAVFPG DHPNMATSLN NLAELYRSQG RYREAEPLFI 480
  481 DALAMTKRLF VGDNFDVALN LNNLAGLYYS QGRYGEAEPL YIDALAMTKR LFVGDHPNVA 540
  541 TSLNNLAELY RSQGRYGEAE PLFIDALAMT KRLFVGDHPD VASSLNNLAG LYRSQGRYGE 600
  601 AEPLYIDALA MTKRLFVGDH PDVASSLNNL AELYRSQGRY GEAEPLYIDA LAMTKRLFVG 660
  661 DHPDVASSLN NLAGLYRSQD RYGEAEPLYI DALAMTKRLF VGDHPDVASS LNNLAGLYRS 720
  721 QGRYGEAEPL YSEALAMRKR LFVGDHPDVA TSLNNLAALY KSQGRYGEAK SLYLEALAMR 780
  781 KRLFVGDHPD MVISLNNLAA LYKSQGRYGE AKSLYLEALA MRKRLFVGDH PDMVISLNNL 840
  841 ALLYESQSRY GEAEPLYLEA LQMCQRVLGV NHPTTVVIRG NLAFLQRQLT PVAIWRRQLG 900
  901 RILQLLLRIF FLPFYWLWRS LNRH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle