YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17230077, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	40	0.97
Non-Cytoplasmic	41	76	0.90
Transmembrane Helix	77	98	0.91
Cytoplasmic	99	106	0.82
Transmembrane Helix	107	126	0.94
Non-Cytoplasmic	127	133	0.63
Transmembrane Helix	134	154	0.92
Cytoplasmic	155	160	0.85
Transmembrane Helix	161	184	0.89
Non-Cytoplasmic	185	208	0.67
Transmembrane Helix	209	232	0.81
Cytoplasmic	233	251	0.68
Transmembrane Helix	252	278	0.87
Non-Cytoplasmic	279	292	0.63
Transmembrane Helix	293	313	0.60
Cytoplasmic	314	316	0.29
Transmembrane Helix	317	341	0.80
Non-Cytoplasmic	342	346	0.29

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVDWLVIRS ETMSLRIDRR VPPILLCLVV AIVVAMVMNL GRGEYPIAPL DIIKTVLGID  60
   61 TGNPDHAFVI YNLRLPRTLV ACMVGVALAV AGTIFQGITR NPLADPGIIG INAGASLAAV 120
  121 TVIVLFPSAP IYTLPLSAFA GALLMAGLIY SLAWNNGSSP VLFILMGVGL SAIAGAFTSL 180
  181 MITFGDIYSV SDALVWLAGS VYGRTWEQVF SFLPWLIVFV PMALTLARHL NTLNLGDDVA 240
  241 KGLGTRVEWQ RGLLVLVGVA LAGAGVATAG MIGFVGLIAP HLGRQLVGTN HQGLLPTSAL 300
  301 LGGMLVVVAD FLGRTLFAPI EIPCGVVTAA VGAPYFLYLL IRNRKK