YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25530707
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	409	0.65
Transmembrane Helix	410	434	0.85
Cytoplasmic	435	443	0.52
Transmembrane Helix	444	464	0.69
Non-Cytoplasmic	465	465	0.31
Transmembrane Helix	466	488	0.71
Cytoplasmic	489	511	0.91
Transmembrane Helix	512	534	0.89
Non-Cytoplasmic	535	540	0.76
Transmembrane Helix	541	561	0.93
Cytoplasmic	562	567	0.87
Transmembrane Helix	568	588	0.91
Non-Cytoplasmic	589	596	0.66
Transmembrane Helix	597	616	0.93
Cytoplasmic	617	627	0.72
Transmembrane Helix	628	648	0.92
Non-Cytoplasmic	649	660	0.93
Transmembrane Helix	661	682	0.90
Cytoplasmic	683	690	0.78
Transmembrane Helix	691	713	0.90
Non-Cytoplasmic	714	718	0.87
Transmembrane Helix	719	738	0.95
Cytoplasmic	739	751	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRFEKRPDN DPRVRGELSR AAETALWAVV EDLESLQQNV LRSFQEEIKK LQTEKDRLTD  60
   61 EVQQLIEEKE HLQEVRRITE QQVLIRQLSE ALAKHICSQL QSSLAKIANQ TESQIAALKS 120
  121 AQSIGPAIEN NEQVEKMLGS LDDNLTIAFN SLQQELKNYQ SNLSQQLSRM YNQQQQGETI 180
  181 VEELIDRLRG ELTRAIQETS TAKAQLSPPT VLQPPELQPP SSPVVVNLSP PTVLQFPDQQ 240
  241 SPNPLQASTP LEETSTTKPS VSITPPEKST PVTIVPPPQE TRPETKSVIP KVSPDSETKL 300
  301 QSSQEKAAEP SSVINRELSA GAAKSPLTPE KPPEPISTSK TKFSPSSEKP PEPISTSKTK 360
  361 FSPSSEKPPE PVSVLSRDSS ASKASTPPPA PVVRRGSTPS SSRSRKSSNL SPVQVGFLLV 420
  421 VLSTVMTALY NVVLKGMFYK TSQLSAMLEV AGLISPTLGN IMLILTLRLM VVVPLMILLA 480
  481 PMMYPQVWQD LQNLKQSLGN NQSGSRSQPQ RFVQLMFASG CFLFLSQVLI YLAIGQVPTG 540
  541 VAIALFFVYP LINGVLSWLL FRDRPGVFRA SAIGAIFCGE VLVFAGATST GIGTTPLGSI 600
  601 TAILAGAAFA CYLILTRVCA AKVHPVSLSL INFVTMLGLS FIFLMIPLPE NWSLVVDPSK 660
  661 LLEIVLSAFI LGALTLLSYV FSHIGINKLG GLRSAIISAS VPILTVILAG LVLQETLNIA 720
  721 QIFGVLFVTF GAIAFGIGKI QNPNKPANAE G