YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17229699, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQPTSINLI ILQSHKRTIA DMPTRNWQKL IRLVFLMLLA FGVTLILATE PAFGQESAQN  60
   61 APGFNPQAWL KNALQWIDGL GAVGALAFIL LYIIATVAFL PGSILTLGAG VVFGVVWGSL 120
  121 YVFIGATIGA TAAFLVGRYL ARGWVAKKIV GNQKFRAIDE AVGREGLKIV LLTRLSPIFP 180
  181 FNLLNYAYGV TGVSLKDYVL ASIGMIPGTI MYVYIGSLAG SIATIGTESQ PGNPGVQWAI 240
  241 RIIGFIATVA VTIYVTKVAR KALEDEVLES TNDDENKQIN LN

Type	Start	End	Confidence
Cytoplasmic	1	29	0.93
Transmembrane Helix	30	53	0.86
Non-Cytoplasmic	54	73	0.88
Transmembrane Helix	74	100	0.79
Cytoplasmic	101	101	0.37
Transmembrane Helix	102	136	0.77
Non-Cytoplasmic	137	170	0.50
Transmembrane Helix	171	189	0.42
Cytoplasmic	190	202	0.59
Transmembrane Helix	203	225	0.80
Non-Cytoplasmic	226	236	0.76
Transmembrane Helix	237	256	0.92
Cytoplasmic	257	282	0.89