YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17229538, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.60
Transmembrane Helix	7	27	0.89
Cytoplasmic	28	31	0.62
Transmembrane Helix	32	51	0.71
Non-Cytoplasmic	52	58	0.75
Transmembrane Helix	59	79	0.89
Cytoplasmic	80	88	0.82
Transmembrane Helix	89	113	0.86
Non-Cytoplasmic	114	119	0.71
Transmembrane Helix	120	140	0.91
Cytoplasmic	141	151	0.90
Transmembrane Helix	152	174	0.91
Non-Cytoplasmic	175	186	0.74
Transmembrane Helix	187	207	0.90
Cytoplasmic	208	221	0.81
Transmembrane Helix	222	245	0.90
Non-Cytoplasmic	246	274	0.88
Transmembrane Helix	275	293	0.88
Cytoplasmic	294	298	0.76
Transmembrane Helix	299	319	0.91
Non-Cytoplasmic	320	327	0.66
Transmembrane Helix	328	348	0.87
Cytoplasmic	349	359	0.80
Transmembrane Helix	360	379	0.94
Non-Cytoplasmic	380	773	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEDFRLIVD LVSVLAVAAC GGLFAALLKQ PVLLGYLIGG MVVGPAGLGL IKEVIQVETL  60
   61 AQFGVAFLLF ALGVEFSFAE LKKVKAIALG GGGLQIALTI LTTVLVCGLT GAWGALPAKG 120
  121 VFLGSILSLS STAVVLKCLM ERNETETPHG QVMLGILVVQ DLALGLMLAV LPALHEPGEV 180
  181 IVVAVLTALV RIGLFAAGAV AAGIWVIPPL LRLLARTESR ELFLLGVVAL CLGIALLTES 240
  241 LGLSIEMGAF VAGLMISEVE YADQTLTYVE PLRDIFASLF FAAIGMLIDP VFLLQNIELI 300
  301 LGLVALVFLG KFLIITPLVK LFRYPLKTAL IAGLGLAQIG EFSFVLASEG QALGLVSRRV 360
  361 YLLILGTTAV TLMLTPFVLR VLPAVFNFAE SIPWLKPYIA GEGQALDISE DLPFQDHVVV 420
  421 CGYGRVGKNL VKLLQQHNMP VVVIDQSESR IQQLRDAEIP YVYGNCVSLH VLETAGVSHA 480
  481 KGMAIALPDP MSTRLCVKRA LELCPELDLV VRATQDKNIE LLYQLGAREV VQPEFEASIE 540
  541 MATHLLTDVG WTSGLLQQEM QQIRSDHYLD FRPERNADEV SRHLQQATQD LNRRWYALPA 600
  601 DSPLIGMNLE EADMRYLTGV SLMAIRRANG EEIDYPSNQT KLAAGDRLLI VGAKEELAAL 660
  661 EEFAQGKVGV PGQNSACQWV AVDANSAVLG KTLKDLALDI QSGIKVQAIR RDGKFIRSPN 720
  721 DNIDLRTGDQ VLLCGSLPSL NQIQPLFAVV NEIPLAIPIV KAKETEVVKE MRG