YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25297687
Protein type:	Globular with Signal Peptide
Type Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRRINRRRF LIYGSATIGS SILLKACANS TPNATNSPAT SGNASPVAAS GGNTIKIGIL  60
   61 HSLSGTMSIS EKSVVDAEKL AIKEINAAGG VLGKQIEAIV EDGASNWDTF REKATKLIDQ 120
  121 DKVAVVFGCW TSASRKNVKP VFESKDHMLW YPVQYEGQEC SKNIFYTGAA PNQQIEPSVD 180
  181 WLLKNKGKEF FLVGSDYVFP RTANTIIKAQ LEALGGKTVG EDYLPLGNTE VTPIISKIKQ 240
  241 ALPNGGVIYN TLNGDSNVAF FKQLKGAGLT PDKHPSMSVS IAEEEVKAIG VEYLKGHYAA 300
  301 WNYFQTVDTP ANKKFVEAFK KEYGADRVTN DPMEAAYIAV YLWKQSVEKA GSPDLAKVRA 360
  361 AAYGQTIDAP EGKVTVNTNH HISKIVRIGE VRDDGLFDII YATPAPVEPV PWNQFVKETK 420
  421 GFACDWSDPG KGEKYKKA

Type	Start	End	Confidence
Signal Peptide	1	28	0.75
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	438	0.99