YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17130425, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAIALGGV LILGTLWYRF VEGWSWEDAA YMTVITLATV GYGETNPLGS RGRLFTIALI  60
   61 LLGVVNLGYI VNRFTEAVIQ GYFQQGIRLR QQRRLMESLS EHYIICGFSR TGRQIAKEFR 120
  121 AEDVTFVVID SDAESIEKAQ AEGHTAFQGD ATLDDTLLRV GIERAICLVA ALPSDAENLY 180
  181 TVLSAKTLNP RIRAIARAST EEALQKLQRG GADAVISPYI TGGKRMAAAA LRPQVLDFVD 240
  241 GILTGADRQL YMEEFLLDPA LCPFVGQSLQ KAKLRSQSGA LVLAIRRLDG MLIGGPTGDT 300
  301 VLMPGDTLIC MGTADQLRTL NQILGPIGSQ QLRKPKNI

Type	Start	End	Confidence
Cytoplasmic	1	4	0.44
Transmembrane Helix	5	21	0.42
Non-Cytoplasmic	22	28	0.53
Transmembrane Helix	29	43	0.43
Cytoplasmic	44	53	0.44
Transmembrane Helix	54	71	0.70
Non-Cytoplasmic	72	338	0.82