YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17227816, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTISEPKPHS SGTDTGKIKP PQKKSWVPTI LIFVAIAYLA LIQYIPAINV FVQAFSKGVG  60
   61 PFLENLTHSD FLSAARLTVL LALIAVPLNT VFGLCAAWAI ARHKFPGRAL VLSIIDLPFS 120
  121 ISPVVAGLML VLLYGRNGWF GTLLEANDIR IIFAFPGMVL ATAFVSMPFV AREVIPVLEE 180
  181 FGKDQEEAAK TLGANEWQTF WRVTLPGIRW GLLYGVILTN ARAMGEFGAV SVVSGNIANK 240
  241 TQSLPLFVEE AYKQYETEAA FSAAVLLALL AVVTLVLKEI VERKTRIKDV D

Type	Start	End	Confidence
Cytoplasmic	1	25	0.98
Transmembrane Helix	26	47	0.91
Non-Cytoplasmic	48	76	0.91
Transmembrane Helix	77	100	0.90
Cytoplasmic	101	109	0.89
Transmembrane Helix	110	133	0.89
Non-Cytoplasmic	134	150	0.87
Transmembrane Helix	151	171	0.93
Cytoplasmic	172	206	0.92
Transmembrane Helix	207	225	0.78
Non-Cytoplasmic	226	258	0.84
Transmembrane Helix	259	277	0.95
Cytoplasmic	278	291	0.90