YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17227534, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQNDTELLT TSVAAMPILI TGGAGFIGSN FVHHWYEKYP GDRMIVLDAL TYAGNRQNLA  60
   61 DIEGKANLRF VKGDIGDRAL IDQLLEEEKI QAIAHFAAES HVDRSIVAPD AFIQTNVVGT 120
  121 FTLLEAFRHH WTKQGKPANY RFLHVSTDEV YGSLELDDPA FTETTPYAPN SPYSASKAGS 180
  181 DHLARAYYHT YGLPTLITNC SNNYGPYHFP EKLIPLICLN ILLGKPLPIY GDGLNIRDWL 240
  241 YVEDHCRALD IVIHQGKPGE TYNIGGNNEI KNIDLVQMIC ELMDELAPDL PVSPASKLIT 300
  301 FVKDRPGHDR RYAINATKIK TELGWEPQQT ISTGLRHTIQ WYLTHRHWWE ALLPKE

Type	Start	End	Confidence
Cytoplasmic	1	7	0.43
Transmembrane Helix	8	28	0.59
Non-Cytoplasmic	29	356	0.72