YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3560007, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVFLWGVLP YAAFALLIAG LVWRHRYDRF GWTTRSSQIY ESKLLNIASP VFHYGILFVL  60
   61 AGHLIGLFIP ASWTQSIGIS EHAYHLFSLY GGTVSGVLAV AGIGMLVYRR RTNAPVFRAT 120
  121 TANDKLMYVF LLGALLLGMI AKLSDTSGNG YDYRSTIAPW SRSLFTLNPK TELMAGVPVL 180
  181 YHVHAVVGMV LIALVPYTRL VHMFSAPLQY LTRPYVVYRS RDPRQLGPRP DRRGWERAGS 240
  241

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.87
Transmembrane Helix	7	27	0.90
Cytoplasmic	28	46	0.93
Transmembrane Helix	47	69	0.86
Non-Cytoplasmic	70	85	0.85
Transmembrane Helix	86	108	0.93
Cytoplasmic	109	125	0.93
Transmembrane Helix	126	144	0.93
Non-Cytoplasmic	145	179	0.93
Transmembrane Helix	180	201	0.88
Cytoplasmic	202	240	0.97