YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3319758, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	127	0.96
Transmembrane Helix	128	146	0.91
Non-Cytoplasmic	147	150	0.66
Transmembrane Helix	151	169	0.93
Cytoplasmic	170	177	0.89
Transmembrane Helix	178	198	0.90
Non-Cytoplasmic	199	202	0.84
Transmembrane Helix	203	221	0.93
Cytoplasmic	222	230	0.92
Transmembrane Helix	231	253	0.91
Non-Cytoplasmic	254	260	0.76
Transmembrane Helix	261	280	0.96
Cytoplasmic	281	298	0.92
Transmembrane Helix	299	319	0.95
Non-Cytoplasmic	320	324	0.83
Transmembrane Helix	325	344	0.87
Cytoplasmic	345	370	0.82
Transmembrane Helix	371	389	0.67
Non-Cytoplasmic	390	391	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDSSWGAPP QAGYWGPSDQ GPVQGAGPAG PAYDAHYAQQ TRPMPIVPDV PEHGGDQDDD  60
   61 QGTARLSGPL FRDEPFHDQP PRDEPYRDQN PSAQPYAAVP QNPEPMPDAP QPAQSQPPPQ 120
  121 KKSAGRDLGA AIGVGVGLGV VIIASLFVVK AVFVGVIAVA VVVGLWELTK RLEERKGIKA 180
  181 PLVPLAIGGA AMVVAGYARG AEGAWVAMAL TALAVLVWRM TEPPEGYLKD VTAGLFAAFY 240
  241 VPFLATFVAM MLAADDGAWR VLVFLILTVV SDTGAYAVGW RFGRKKLAPR ISPGKTREGL 300
  301 LGAIAFAMVA GALCMQFLID DGAWWQGLLL GLVVAVSATL GDLGESMIKR DLGIKDMGTL 360
  361 LPGHGGIMDR LDSLLPTAPV VWLLLVIFVG S