YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9714442, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMIRDLRAA VRPSRVSLRK DGGAYDTTRD PATASAVVDC AVYHDGTRVE TDVPLTPHTA  60
   61 MRQVRRDGGF VWIGLHEPTE DEFAGIAREF GLHPLAVEDA VQAHQRPKLE RYDDSLFTVF 120
  121 KTVHYVDHDQ LTANSEVVET GEVMCFTGRD FFITVRHGGQ GSLRALRRRL QEDPELLLKG 180
  181 PSAVLHAIAD HVVDGYIAVA DAVQDDIDEV ETEVFSPGRK GSPRGTDAGR IYQLKREVLE 240
  241 FKRAVAPLLR PMQLLSERPM RLVDPEIQKY FRDVADHVAR VQEQVIGFDE LLNSILQANL 300
  301 AQASVAQNED MRKITSWAAI IAVPTMVCGV YGMNFDYMPE THWKFGYPLV LSVTVCICLG 360
  361 IHRTLKRNGW L

Type	Start	End	Confidence
Cytoplasmic	1	313	0.92
Transmembrane Helix	314	335	0.91
Non-Cytoplasmic	336	344	0.78
Transmembrane Helix	345	365	0.92
Cytoplasmic	366	371	0.91