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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7480519
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTPTSPPTP PARGRRRAPS RMERAAGRAA ALQRPRVLLA LLLLLALTCV MLLDGYLRAE  60
   61 VGGDQRVRTG ASASDVPDDV LDGGPILSFP GGQATTVSVP DKTIVLTFDD GPDPTWTPQV 120
  121 LDILEKYDVP GTFFLVGSMV SRHPGIVRDM VEQGNEVGVH TFTHVDLSYQ SQARVTREIE 180
  181 QTQLALAGAA GITSTLFRAP YSSQTDAIDN YSWPVYESLG ADGYTSVFID TDSDDWKRPG 240
  241 VSKIVEWATP EDDEGASVLF HDAGGERSQT IEALPKYIEK MKAKGYTFTT VSGVMADQQS 300
  301 HQPQQSQQQG GGLQAAHHRA TGATLYEGKA LIAAVAVAEW TVPALSVGLV VVGVAVMGRF 360
  361 AMMLVLARRH HRQRNRRRFS WGPPVTGPVS VIVPAYNEKE CIEATLRSLA RSTHPVEIIV 420
  421 VDDGSTDGTA DIAESLGLPG VRVVRQANAG KPAALNNGVR HARYDIVVMM DGDTVFEPDT 480
  481 VRHLVQPFAD PSVGAVAGNA KVGNRRTLIG AWQHIEYVMG FNLDRRMYDL LRCMPTIPGA 540
  541 IGAFRREAVL QAGGMSDDTL AEDTDITIAL HRAGWRVVYE EHARAWTEAP GSLGQLWSQR 600
  601 YRWSYGTMQA LWKHRRSLTD KGPSGRFGRV GMPLVVLFQV VTPVFAPLID VFTVYSMLFV 660
  661 DFRAALLAWL AVLGVQLVCA AYAFRLDREK YRYLLMMPLQ QLAYRQMMYL VLIHSCVTAL 720
  721 TGGRLRWQKL KRTGEVGTPA GTG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle