YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7481018
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLALGPEW ISPDYLIETF SLPGILLIVF AESGLFAFLP GDSLLFTAGL FVAQGEYISQ  60
   61 PLWLVCTLIV AAAVLGDQVG YMIGKFFGPK LFSRPNSKLF KQENLEKAHE FMEKYGPKAI 120
  121 VLARFVPIVR TFAPIVAGAG RMKYRTFLTY NVIGGVAWGT GVTLAGYWLG QIEFIRAHVE 180
  181 GILVLIILVS VVPIAIEYLR ERKKKQRAAA AGPTPPAAQQ HQPQPPYPVM DDATTQLRRV 240
  241 DPYDQPQQQH DQQYDPGYGN QSYGNQPYGG QQPPQQPYAQ QYPQGYGDQP QQYGDQYPYN 300
  301 QGR

Type	Start	End	Confidence
Cytoplasmic	1	18	0.80
Transmembrane Helix	19	40	0.87
Non-Cytoplasmic	41	60	0.72
Transmembrane Helix	61	81	0.91
Cytoplasmic	82	146	0.84
Transmembrane Helix	147	169	0.93
Non-Cytoplasmic	170	176	0.83
Transmembrane Helix	177	199	0.90
Cytoplasmic	200	303	0.99