YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7799254, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSTAPTKA PAEQIAAPTA PPRKVRGRGE RSRAASLASH GVLTLASLVA LFPVAWLVYL  60
   61 SLGPDKNDYL HPGRIWSKMT FDNYAFVLQD TNFFDWLKSS LIVSLGTTVI GVLVAATTGY 120
  121 AVSRMRFPGY RKLMWVLLVT QMFPIAVLIV PMYQILSKLQ LIDNYFGLIL VYCSTAVPYC 180
  181 AWLLKGYFDT IPFEIDEAGR VDGLTPFGTF FRLILPLARP GLAVAGFYSF ITAFGEVAFA 240
  241 STFMLSDTKY TFAVGLQSFV SEHDAQRNLM AATAVLVAIP VSAFFYLVQK NLVTGLTAGG 300
  301 TKG

Type	Start	End	Confidence
Cytoplasmic	1	35	0.98
Transmembrane Helix	36	59	0.88
Non-Cytoplasmic	60	100	0.95
Transmembrane Helix	101	122	0.94
Cytoplasmic	123	132	0.92
Transmembrane Helix	133	155	0.92
Non-Cytoplasmic	156	164	0.80
Transmembrane Helix	165	184	0.90
Cytoplasmic	185	220	0.78
Transmembrane Helix	221	243	0.79
Non-Cytoplasmic	244	268	0.72
Transmembrane Helix	269	288	0.94
Cytoplasmic	289	303	0.74