YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5459401, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	60	0.91
Transmembrane Helix	61	78	0.81
Non-Cytoplasmic	79	86	0.69
Transmembrane Helix	87	109	0.85
Cytoplasmic	110	124	0.97
Transmembrane Helix	125	149	0.87
Non-Cytoplasmic	150	155	0.77
Transmembrane Helix	156	177	0.91
Cytoplasmic	178	183	0.94
Transmembrane Helix	184	203	0.93
Non-Cytoplasmic	204	208	0.80
Transmembrane Helix	209	229	0.90
Cytoplasmic	230	252	0.84
Transmembrane Helix	253	272	0.82
Non-Cytoplasmic	273	278	0.71
Transmembrane Helix	279	297	0.93
Cytoplasmic	298	317	0.90
Transmembrane Helix	318	338	0.91
Non-Cytoplasmic	339	340	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWYARAFTA TSHGRACWES LSGVCVTAVE SRPAGVIGTS QSPSHRPFGA RVKAFVALTK  60
   61 PRIIELLLIT TVPVMFLAEQ GVPNLKLVLL TCVGGYLSAG GANALNMYID RDIDALMDRT 120
  121 SQRPLVTGMV SPVECLVFGI TLAIVSTLLF GFTVNWLSAW LSLGALLFYV VVYTMILKRR 180
  181 TSQNIVWGGI AGCLPVLIGW SAVTNSMSWA PVILFGVMFF WTPPHYWPLS MKVKEDYARV 240
  241 GVPMLPVIAS NKVVARQIVI YSWVMVVVSL LLQPLGYTGW FYTAVALAAG GMWLWEAHGL 300
  301 QNRAKAEVTG GKLKEMRLFH WSITYVSVLF LAIAVDPFLR