YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6822233, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAQATDVTP ATGAPPPRST RAAALRRRLP GSLAWHLGSL AILAVILYPV LWVIGGSFKE  60
   61 SGDIVGSLDL FPGDPITDNY TSLADGIADI SISTFFVNSL FLAVGSVIGI VVSCSLTAYA 120
  121 FAKIRFAGRN LLFTLMIGTL LLPYHVLLIP QYVLFRNLDM INTYTPLLLG KYLATEAFFV 180
  181 FLMVQFMRNL PRELDEAARL DGCGHLRIYW SIVLPLCRPA LITSAIFTFI NSWNDFMGPL 240
  241 IYLNEPGKYT ISLGLKMFVD QEGLANYGGM IAMSLVALLP VLAFFLAFQR YLIDGMATSG 300
  301 LKG

Type	Start	End	Confidence
Cytoplasmic	1	32	0.97
Transmembrane Helix	33	54	0.92
Non-Cytoplasmic	55	99	0.93
Transmembrane Helix	100	121	0.92
Cytoplasmic	122	130	0.79
Transmembrane Helix	131	149	0.95
Non-Cytoplasmic	150	167	0.84
Transmembrane Helix	168	187	0.93
Cytoplasmic	188	207	0.92
Transmembrane Helix	208	230	0.93
Non-Cytoplasmic	231	266	0.95
Transmembrane Helix	267	288	0.92
Cytoplasmic	289	303	0.90