YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8744950, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTPMPTSTV GAQTPAKASE PASAPDPARI ARRRRLTQWG FVAPAVVFML LFFGYPLVRN  60
   61 VVMSFQDYTP KTFFTGEAPF NGADNWSNVF QDALFGKALW HTLVFTAGSL LGQFCIGLAL 120
  121 AVFFSRRFPL NGVLRSLILL PWLVPMVVSG IVWRRILDQD TGVLNSFLDT LGIGGHTPWL 180
  181 TSPEMALLSV ILVNIWIGIP FNMVILYGGL QEIPKELHEA AALDGASAWR TFRSVTLPML 240
  241 KPVVTVVLVL GFMSTVKILD LILALTDGGP ADATQTLGTL TYQNSFVQLD FGAGAVVGNV 300
  301 LILISAVFAV FYLRANRTEG K

Type	Start	End	Confidence
Cytoplasmic	1	36	0.99
Transmembrane Helix	37	58	0.91
Non-Cytoplasmic	59	101	0.95
Transmembrane Helix	102	124	0.92
Cytoplasmic	125	132	0.89
Transmembrane Helix	133	157	0.84
Non-Cytoplasmic	158	184	0.94
Transmembrane Helix	185	207	0.88
Cytoplasmic	208	238	0.92
Transmembrane Helix	239	259	0.88
Non-Cytoplasmic	260	290	0.91
Transmembrane Helix	291	313	0.93
Cytoplasmic	314	321	0.91