YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6580638, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPVTSCDMA LATRTDRRPS MARTVWDSTV GKKTVMAVSG LVMLLYLVAH MIGNLKIYFG  60
   61 VEEFNHYAHW LRTVGEPFMH YEWTLWLIRV VLVVAVVAHA VSAYQLSRRD IKARPSKYVH 120
  121 KKARSSYATR TMRWGGIILG LFIVWHILDL TTGTVHSGGF ETGKPYQNVV DTFSTWYGNV 180
  181 IYIVAMLALG LHIQHGFWSA AQTLGAGSRT RDRALKTTAN VLALLLTIGF IAVPVGVMTG 240
  241 VVS

Type	Start	End	Confidence
Cytoplasmic	1	33	0.93
Transmembrane Helix	34	53	0.87
Non-Cytoplasmic	54	84	0.91
Transmembrane Helix	85	106	0.94
Cytoplasmic	107	130	0.92
Transmembrane Helix	131	148	0.95
Non-Cytoplasmic	149	177	0.87
Transmembrane Helix	178	198	0.90
Cytoplasmic	199	217	0.89
Transmembrane Helix	218	238	0.93
Non-Cytoplasmic	239	243	0.67