YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13488455, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	67	0.56
Transmembrane Helix	68	90	0.87
Cytoplasmic	91	102	0.73
Transmembrane Helix	103	124	0.78
Non-Cytoplasmic	125	177	0.80
Transmembrane Helix	178	200	0.90
Cytoplasmic	201	210	0.54
Transmembrane Helix	211	231	0.89
Non-Cytoplasmic	232	240	0.65
Transmembrane Helix	241	263	0.85
Cytoplasmic	264	276	0.63
Transmembrane Helix	277	298	0.90
Non-Cytoplasmic	299	308	0.58
Transmembrane Helix	309	332	0.86
Cytoplasmic	333	345	0.49
Transmembrane Helix	346	365	0.68
Non-Cytoplasmic	366	366	0.38
Transmembrane Helix	367	389	0.73
Cytoplasmic	390	495	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCAAVGRSAR PLPWPRKAVW APDRRTGLAR CFHAQGSIDM GNTGVIDQFL ATFTRYIDSG  60
   61 FGLLGGEVAF VATTLIVIDV TLAALFWSWG ADDDILARLV KKTLFVGVFA YLISNWNGLA 120
  121 QIVFESFSGL GLKASGTGFS AQDLLHPGKV AQTGLDAGRP LLEAISGLMG YVSFFENFIQ 180
  181 IACLLFAWAL VLLAFFILAV QLFVTLIEFK LATLAGFVLI PFGLFGKTAF MAERVLGNVI 240
  241 SSGIKVLVLA VVIGIGSTLF GEFTQGFGNE SPTIDQAMAI VLAALSLLGL GTFGPGIANG 300
  301 LVAGGPQLGA GAAVGTGLAA GGMAVVGYGA AGLAARGGTA AASGAVSVAR GGTSLAGGGS 360
  361 AAYMLGAAGQ TGAAGIASGL GGIARAGASA AASPLKRAAA NTGRSLKSSF ASGASSAAEV 420
  421 TGGSSTMGTI GGAALAAAAP ASGAGKPSGS QGQPEWARRL QRTQRVSHGA QTAAHAVRAG 480
  481 DSHGGGASIS LSEGE