YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTU3C_STAA1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.85
Transmembrane Helix	15	36	0.89
Non-Cytoplasmic	37	75	0.90
Transmembrane Helix	76	100	0.87
Cytoplasmic	101	136	0.93
Transmembrane Helix	137	161	0.87
Non-Cytoplasmic	162	181	0.90
Transmembrane Helix	182	202	0.96
Cytoplasmic	203	220	0.89
Transmembrane Helix	221	244	0.88
Non-Cytoplasmic	245	286	0.92
Transmembrane Helix	287	305	0.92
Cytoplasmic	306	314	0.85
Transmembrane Helix	315	333	0.94
Non-Cytoplasmic	334	339	0.74
Transmembrane Helix	340	361	0.81
Cytoplasmic	362	363	0.62
Transmembrane Helix	364	386	0.73
Non-Cytoplasmic	387	391	0.67
Transmembrane Helix	392	411	0.95
Cytoplasmic	412	688	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKKLFGQLQ RIGKALMLPV AILPAAGILL AFGNAMHNEQ LVEIAPWLKN DIIVMISSVM  60
   61 EAAGQVVFDN LPLLFAVGTA LGLAGGDGVA ALAALVGYLI MNATMGKVLH ITIDDIFSYA 120
  121 KGAKELSQAA KEPAHALVLG IPTLQTGVFG GIIMGALAAW CYNKFYNITL PPFLGFFAGK 180
  181 RFVPIVTSVV AIATGVLLSF AWPPIQDGLN SLSNFLLNKN LTLTTFIFGI IERSLIPFGL 240
  241 HHIFYSPFWF EFGSYTNHAG ELVRGDQRIW MAQLKDGVPF TAGAFTTGKY PFMMFGLPAA 300
  301 AFAIYKNARP ERKKVVGGLM LSAGLTAFLT GITEPLEFSF LFVAPVLYGI HVLLAGTSFL 360
  361 VMHLLGVKIG MTFSGGFIDY ILYGLLNWDR SHALLVIPVG IVYAIVYYFL FDFAIRKFKL 420
  421 KTPGREDEET EIRNSSVAKL PFDVLDAMGG KENIKHLDAC ITRLRVEVVD KSKVDVAGIK 480
  481 ALGASGVLEV GNNMQAIFGP KSDQIKHDMA KIMSGEITKP SETTVTEEMS DEPVHVEALG 540
  541 TTDIYAPGVG QIIPLSEVPD QVFAGKMMGD GIGFIPEKGE IVAPFDGTVK TIFPTKHAIG 600
  601 LESESGVEVL IHIGIDTVKL NGEGFESLIN VDEKVTQAQP LMKVNLAYLK AHAPSIVTPM 660
  661 IITNLENKEL VIEDVQDADP GKLIMTVK