YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|255007216
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTKKLYFLS ISIIILVAIS IAIYITLNSN TKTRLTNDSQ QQIDKIIEHD LQKGHIPGAS  60
   61 ILIVKNGKVF LNKGYGYQDV DKKVKASPTT KYEIASNTKA FTGLAILKLA QEGRLNLNDD 120
  121 VSKHVPHFKM NYNGQNETIT IKQLLAQTSG IPSDITSEDA VTNKNNRLND VTRAIMGDEL 180
  181 HHKPGEEFEY SNMNYDLLGL IIQNVTKQSY TKYITNSWLK PLHMTHTSFK QTNNKSKHDA 240
  241 IGYELQGSTP VVSKPEFNLW DTPSAYMMTS TEDLEHWIKF QLNPPDKYKS LVQQSHKNLS 300
  301 STIGEPNANA YASGWFTNND EHLVFHSGTL DNFSSFILLN PKQNYGIVVL ANLNSEYVPK 360
  361 LVEHLNTQIV NHKRYSTVAS ILNQYKDQFN IVTVLMTTLI LLAFIFSAYR AWQMRHGQIL 420
  421 LRRSKRIAVL SWLTLCLCIA IALILYALPY LILGSNNWSF VLTWLPIEIK LALITTLIAL 480
  481 FSTLIVILLF LHTKITKT

Type	Start	End	Confidence
Cytoplasmic	1	6	0.85
Transmembrane Helix	7	27	0.87
Non-Cytoplasmic	28	390	0.99
Transmembrane Helix	391	412	0.91
Cytoplasmic	413	428	0.95
Transmembrane Helix	429	452	0.91
Non-Cytoplasmic	453	470	0.91
Transmembrane Helix	471	491	0.97
Cytoplasmic	492	498	0.84