YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|147741858, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.98
Transmembrane Helix	5	25	0.95
Cytoplasmic	26	140	0.98
Transmembrane Helix	141	159	0.92
Non-Cytoplasmic	160	178	0.84
Transmembrane Helix	179	199	0.95
Cytoplasmic	200	206	0.91
Transmembrane Helix	207	230	0.90
Non-Cytoplasmic	231	235	0.86
Transmembrane Helix	236	257	0.93
Cytoplasmic	258	264	0.87
Transmembrane Helix	265	288	0.88
Non-Cytoplasmic	289	294	0.91
Transmembrane Helix	295	318	0.89
Cytoplasmic	319	325	0.94
Transmembrane Helix	326	346	0.91
Non-Cytoplasmic	347	354	0.82
Transmembrane Helix	355	374	0.92
Cytoplasmic	375	393	0.86
Transmembrane Helix	394	417	0.88
Non-Cytoplasmic	418	424	0.86
Transmembrane Helix	425	447	0.87
Cytoplasmic	448	454	0.81
Transmembrane Helix	455	473	0.94
Non-Cytoplasmic	474	489	0.85
Transmembrane Helix	490	513	0.86
Cytoplasmic	514	526	0.85
Transmembrane Helix	527	546	0.89
Non-Cytoplasmic	547	602	0.93
Transmembrane Helix	603	621	0.96
Cytoplasmic	622	643	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTFIISYI ILALIIVGVI NLFLIRSRKK GKRQQKEQQF TTRQSNQSKF KASDLDKTTD  60
   61 QSTQRMTHEE LRVDNQDDHS QVSLNGYTKG SEKDQEAFTN NNGEEAVAAK NPESEEYKVN 120
  121 EKIKKEHKNF IFGEGVSRGK ILAALLFGMF IAILNQTLLN VALPKINTEF NISASTGQWL 180
  181 MTGFMLVNGI LIPITAYLFN KYSYRKLFLV ALVLFTIGSL ICAISMNFPI MMVGRVLQAI 240
  241 GAGVLMPLGS IVIITIYPPE KRGAAMGTMG IAMILAPAIG PTLSGYIVQN YHWNVMFYGM 300
  301 FIIGIIAILV GFVWFKLYQY TTNPKADIPG IIFSTIGFGA LLYGFSEAGN KGWGSVEIET 360
  361 MFAIGIIFII LFVIRELRMK SPMLNLEVLK FPTFTLTTII NMVVMLSLYG GMILLPIYLQ 420
  421 NLRGFSALDS GLLLLPGSLI MGLLGPFAGK LLDTIGLKPL AIFGIAVMTY ATWELTKLNM 480
  481 DTPYMTIMGI YVLRSFGMAF IMMPMVTAAI NALPGRLASH GNAFLNTMRQ LAGSIGTAIL 540
  541 VTVMTTQTTQ HLSAFGEELD KTNPVVQDHM RELASQYGGQ EGAMKVLLQF VNKLATVEGI 600
  601 NDAFIVATIF SIIALILCLF LQSNKKAKAT AQKLEASSNN NHE