YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148267847, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNENEKNIRK NFLKFTESRY MKFVGGNDLV FSLIALVLLG IVIFIFEKVS YVFDPFIIVF  60
   61 KTIAAPIIVS LILFYLFNPI VNMMERYRIP RVAGISIIYL AVVGVITLIV NLLIPIIGSQ 120
  121 VDSLVKNSPQ YLEKLINSID KIANNTFFSS YYSQINDWLN SLPKKIPSML SEFTDGFGSK 180
  181 IATFAETIAN IGVVIVTTPF VLFFMLKDGH HFKEFSTNIM PPKFRKDFHD LLEKMSVQVG 240
  241 SYIQGQIIVS FCIGILLFIG YSVIGLKYSL VLASIAAVTS VVPYLGPTIA ISPAIVIAAI 300
  301 TSPWMLLKLA VVWTLVQFVE GHFISPNIMG KTLKIHPLTI IFILLCAGKL LGIVGVILGI 360
  361 PGYAILKVLV THLFQLFKRR YNRFYGNDVG EYDIKESNKI VE

Type	Start	End	Confidence
Cytoplasmic	1	23	0.93
Transmembrane Helix	24	46	0.90
Non-Cytoplasmic	47	56	0.84
Transmembrane Helix	57	77	0.93
Cytoplasmic	78	94	0.81
Transmembrane Helix	95	117	0.89
Non-Cytoplasmic	118	182	0.96
Transmembrane Helix	183	206	0.86
Cytoplasmic	207	241	0.92
Transmembrane Helix	242	264	0.86
Non-Cytoplasmic	265	271	0.62
Transmembrane Helix	272	301	0.69
Cytoplasmic	302	303	0.43
Transmembrane Helix	304	324	0.64
Non-Cytoplasmic	325	337	0.55
Transmembrane Helix	338	370	0.76
Cytoplasmic	371	402	0.72