YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|87128198, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNFFDILSE RKGQLFSTMI EHIQISFIAL LIATAIAVPL GILLTKTKTI SEIVMNIAAI  60
   61 LQTIPSLALL GLMIPLFGIG RVPAIIALVV YALLPILRNT YTGIKEVDPS LIEAAKGIGM 120
  121 KPFRRLTKVE LPIAMPVIMA GVRTAMVLII GTATLAALIG AGGLGDLILL GIDRNNASLI 180
  181 LLGAIPAALL AIIFDLILRF MAKLSYKKLL MTLGVIVMII ILAIAIPMFA QKGDKITLAG 240
  241 KLGSEPSIIT NMYKILIEEE TKNTVEVKDG MGKTAFLFNA LKSDDIDGYL EFTGTVLGEL 300
  301 TKEPLKSKEE KKVYEQAKQS LEKKYQMTML KPMKYNNTYA LAVKRDFAKQ HNIRTIGDLN 360
  361 KVKDQLKPGF TLEFNDRPDG YKAVQKAYNL NLDNIRTMEP KLRYQAINKG NINLIDAYST 420
  421 DAELKQYDMV VLKDDKHVFP PYQGAPLFKE SFLKKHPEIK KPLNKLENKI SDEDMQMMNY 480
  481 KVTVKNEDPY TVAKDYLKAK GLIK

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.79
Transmembrane Helix	23	44	0.93
Cytoplasmic	45	52	0.73
Transmembrane Helix	53	74	0.83
Non-Cytoplasmic	75	78	0.54
Transmembrane Helix	79	97	0.80
Cytoplasmic	98	143	0.87
Transmembrane Helix	144	164	0.87
Non-Cytoplasmic	165	176	0.77
Transmembrane Helix	177	198	0.93
Cytoplasmic	199	208	0.84
Transmembrane Helix	209	230	0.94
Non-Cytoplasmic	231	504	0.98