YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|156720808, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	29	0.96
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	324	0.99
Transmembrane Helix	325	346	0.86
Cytoplasmic	347	355	0.89
Transmembrane Helix	356	378	0.91
Non-Cytoplasmic	379	390	0.87
Transmembrane Helix	391	411	0.91
Cytoplasmic	412	429	0.87
Transmembrane Helix	430	449	0.92
Non-Cytoplasmic	450	469	0.87
Transmembrane Helix	470	491	0.94
Cytoplasmic	492	497	0.90
Transmembrane Helix	498	520	0.89
Non-Cytoplasmic	521	550	0.91
Transmembrane Helix	551	569	0.93
Cytoplasmic	570	571	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKHYLTKFV AMLITAAMVC SFGLLKSQAA EQQSISDVYS VITDAKSALS NNSISNDNKQ  60
   61 KAIEQVVSAV KKLSLEDNSE GNAVKSDVRK LEDAKANDNQ KDTLSQLTKS LIAYEEKLAS 120
  121 KDAGSKIKLL QQQVDAKDAA MTKAIKDKNK AELESLNNSL NQIWTSNETV IRNYDANQYG 180
  181 QIEVALLQLR IAIHKSPLDT AKVSHAWTTF KSNIDHVDKK SDTSANDQYH VSQLNDALEK 240
  241 AIKAIDDNQL SDADAALTHF IEIWPYVEGQ IQTKDGALYT KIEDKIPYYQ SVLDEHNKSH 300
  301 VKDGLVDINN QIKEVVGHSY SFVDVMIIFL REGLEVLLIV MTLTTMTRKV KDNKGTASVI 360
  361 GGAIAGLVLS IILAITFVET LGNSGILRES MEAGLGIVAV ILMFIVGVWM HKRSNAKRWN 420
  421 DMIKNMYANA ISNGNLVLLA TIGLISVLRE GVEVIIFYMG MIGELATKDF IIGIALAIVI 480
  481 LIVFAVLFRF IVRLIPIFYI FRVLSIFIFI MGFKMLGVSI QKLQLLGAMP RHVIEGFPTI 540
  541 NWLGFYPSYE PLIAQAAYIM VVAILIFKFK K