YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTG3C_STAA9
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.90
Transmembrane Helix	16	36	0.93
Non-Cytoplasmic	37	73	0.67
Transmembrane Helix	74	100	0.86
Cytoplasmic	101	125	0.51
Transmembrane Helix	126	150	0.83
Non-Cytoplasmic	151	169	0.51
Transmembrane Helix	170	193	0.87
Cytoplasmic	194	203	0.48
Transmembrane Helix	204	233	0.68
Non-Cytoplasmic	234	274	0.61
Transmembrane Helix	275	296	0.82
Cytoplasmic	297	302	0.65
Transmembrane Helix	303	321	0.86
Non-Cytoplasmic	322	327	0.49
Transmembrane Helix	328	350	0.81
Cytoplasmic	351	354	0.43
Transmembrane Helix	355	374	0.63
Non-Cytoplasmic	375	380	0.71
Transmembrane Helix	381	402	0.91
Cytoplasmic	403	681	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKKLFGQLQ RIGKALMLPV AILPAAGLLL AIGTAIQGEA LQHYLPFIQN GGVQNVAKLM  60
   61 TAAGSIIFEN LPMIFALGVA IGLAGGDGVA AIAAFVGYII MNKTMGDFLQ VTPKNVTDPA 120
  121 SGYASILGIP TLQTGVFGGI IIGALAAWCY NKFYNINLPS YLGFFAGKRF VPIMMATTSF 180
  181 ILAFPMALIW PTIQSGLNAF STGLLDSNTG VAVFLFGFIK RLLIPFGLHH IFHAPFWFEF 240
  241 GSWKNAAGEI IHGDQRIFIE QIREGAHLTA GKFMQGEFPV MMFGLPAAAL AIYHTAKPEN 300
  301 KKVVAGLMGS AALTSFLTGI TEPLEFSFLF VAPLLFFIHA VLDGLSFLTL YLLDVHLGYT 360
  361 FSGGFIDYVL LGVLPNKTQW WLVIPVGLVY AVIYYFVFRF LIVKLKYKTP GREDKQSQAV 420
  421 TASATELPYA VLEAMGGKAN IKHLDACITR LRVEVNDKSK VDVPGLKDLG ASGVLEVGNN 480
  481 MQAIFGPKSD QIKHEMQQIM NGQVVENPTT MEDDKDETVV VAEDKSATSE LSHIVHAPLT 540
  541 GEVTPLSEVP DQVFSEKMMG DGIAIKPSQG EVRAPFNGKI QMIFPTKHAI GLVSDSGLEL 600
  601 LIHIGLDTVK LNGEGFTLHV EEGQEVKQGD LLINFDLDYI RNHAKSDITP IIVTQGNITN 660
  661 LDFKQGEHGN ISFGDQLFEA K