YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7444893
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPSESILML MVAFLLVLLN AFFVLSEFAL VKVRKTRLEE LVKIGNSNAK LALEMSQRLD  60
   61 TYLSATQLGI TLSSLALGWV GEPAIAKLLA ALFESMDLRE NPIFIHSMSV VIAFLSITFL 120
  121 HVVLGEIVPK SLAIAKSEKA TLFAARPLHV FWVVFYPVVR LFDVIAHFFL KKMGVNPKEH 180
  181 EGMHSEEELK IIVGESLREG IIDSVEGEII KNAVDFSDTS AKEIMTPRKD MVCLDEENSY 240
  241 EENIDIVLKS HFTRYPYCKG SKDNIIGMVH IRDLLSRSIF TPKMHDFKQI VRKMIIVPES 300
  301 ASISQILIKM KKEQIHTALV IDEYGGTAGL LTMEDIIEEI MGEISDEYDL KQEGVNKLEE 360
  361 GVFELEGMLD LESVEEVLHI QFDKECEQVT LGGYVFSLLE RMPIEGDTIV SHGYAFEVLS 420
  421 VDGARIKRLK AVKQDQGENE A

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.80
Transmembrane Helix	7	30	0.87
Cytoplasmic	31	62	0.78
Transmembrane Helix	63	81	0.77
Non-Cytoplasmic	82	102	0.63
Transmembrane Helix	103	125	0.91
Cytoplasmic	126	144	0.65
Transmembrane Helix	145	167	0.64
Non-Cytoplasmic	168	441	0.75