YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30177740, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.26
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IEFLDAKSSK SLGKCRVSGD TTLQALKTEV QKLKPALTVH RQSLRLEPRG KPPKESETLK  60
   61 SLNVAAGGKI YVRDLGPQIS WKGVFLAEYA GPIFVYMLFY QRPSLIYSNA DNPMSLTAKI 120
  121 AAACWVGHYT KRLLETLFVH RFSHATMPLR NLFKNCSYYW AFAGYVAYHV NHPLFTEPSP 180
  181 ALVYAGLATF VVSELGNFSI HILLRNLRPA GSNVRKIPVP DANPLTQLFN FVSCPNYTYE 240
  241 FFSWVGYTLM TSCIPAGLFA AAGMYQMTVW ALGKHRNYKK EFKDYPKSRK AILPFVL

Type	Start	End	Confidence
Cytoplasmic	1	155	0.72
Transmembrane Helix	156	170	0.64
Non-Cytoplasmic	171	180	0.63
Transmembrane Helix	181	204	0.76
Cytoplasmic	205	224	0.60
Transmembrane Helix	225	239	0.26
Non-Cytoplasmic	240	244	0.47
Transmembrane Helix	245	269	0.77
Cytoplasmic	270	297	0.61