YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|31232819, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANVKDFRKL MKSLIVYSKV AGVELWTAPG KFTPASYYVS FHITVYFAST VWTLRKYIDD  60
   61 PIRMMKVLIT LGTAVQLYIK FFVWHSKPQE VKLFTAELEQ EVLKRYQDGS EEETAVLRHT 120
  121 GRILWIVYRI MSASYIFAAV AFGVYPAFYY FVTGVVMPLF VYELPFCDLS SSLGYAVTMC 180
  181 FQINLLVIGV LGAILSDFVF FMYAIYAMAR TEISILHLGE LENMLIDPNK NEEHTEDIRR 240
  241 KWVQCMHDHQ QSTSFFSTIE NLFGLMCLAQ VATEFLSICD AMLLVLLTDW YPTYSYLYVM 300
  301 FVQLSGYFVI GHLVEIKIDA LYNKIISLPW YKLPVKEQKE FRFLMSRQQY PMMLTAYGFH 360
  361 PMNFEAYMSV LKRLYQFFVM LMQYVG

Type	Start	End	Confidence
Cytoplasmic	1	13	0.66
Transmembrane Helix	14	28	0.39
Non-Cytoplasmic	29	34	0.50
Transmembrane Helix	35	54	0.68
Cytoplasmic	55	125	0.86
Transmembrane Helix	126	149	0.86
Non-Cytoplasmic	150	182	0.79
Transmembrane Helix	183	206	0.87
Cytoplasmic	207	261	0.90
Transmembrane Helix	262	284	0.77
Non-Cytoplasmic	285	293	0.69
Transmembrane Helix	294	314	0.83
Cytoplasmic	315	386	0.79