YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|196027418, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTIQLYTM LSMIGMGAWI GASLDTYQRF LKRQERKRWL VFIHDILFWI VQALFVFYVL  60
   61 LLVNEAELRI YVFLALLCGF AAYQSLLKAI YMRLLNFLIY IFVQTTHFFV QIIQLLMIKP 120
  121 VIIIAQLFIA FILFLFRILL SIGHVLWKMV IWILLFIWKV FFWPVRFIAS LIWKLLPNRV 180
  181 KLFIMKHVGF LQYIAKLKGH IFQLWERIKK KLGGPRK

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.83
Transmembrane Helix	7	27	0.88
Cytoplasmic	28	39	0.88
Transmembrane Helix	40	62	0.92
Non-Cytoplasmic	63	67	0.89
Transmembrane Helix	68	87	0.91
Cytoplasmic	88	93	0.78
Transmembrane Helix	94	115	0.75
Non-Cytoplasmic	116	121	0.56
Transmembrane Helix	122	140	0.92
Cytoplasmic	141	149	0.55
Transmembrane Helix	150	173	0.78
Non-Cytoplasmic	174	217	0.53