YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30253732, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTYIIRRFL QMIPTLFGTS IIIFFLFALL PGDYIDSNPK LTPERAQELR ELYGLNKPII  60
   61 ERYFHWLVNA LHGDFGFSLQ YQEPVTSLLN KFIWNTFIVA VAALFFTWII ALIIGVISAT 120
  121 KQHSWFDRLV TIGVFAAMSF PSFFIGLFLI KLLAVDLKLL PIGGMIDIGS NSTGIAYILE 180
  181 VLRHMILPVF ILTLLGVGSL TRYFRTGMLD VIRQDYIRTA RAKGLKERTV IYKHALKNAI 240
  241 LPAITLLAFE LPGLFSGAII IEQIFNWPGI GSIQLEALNF RDYTVLMAFT MFLSCLTIMA 300
  301 NFLADIVYAF VDPRIRLK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.96
Transmembrane Helix	9	30	0.91
Non-Cytoplasmic	31	95	0.92
Transmembrane Helix	96	117	0.93
Cytoplasmic	118	128	0.77
Transmembrane Helix	129	154	0.86
Non-Cytoplasmic	155	183	0.83
Transmembrane Helix	184	204	0.89
Cytoplasmic	205	239	0.95
Transmembrane Helix	240	261	0.90
Non-Cytoplasmic	262	285	0.88
Transmembrane Helix	286	309	0.90
Cytoplasmic	310	318	0.89